Ragothaman Yennamalli: search on Z-Library

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1

Network and structure based inference of functional single nucleotide polymorphisms associated with the TGFβ1 gene and its role in colorectal cancer (CRC)

Shukla, Ankita, Yennamalli, Ragothaman M., Singh, Tiratha Raj

Journal:

Year:

2018

Language:

english

File:

PDF, 1.87 MB

english, 2018

2

Reference Module in Life Sciences || Protein Design

Yennamalli, Ragothaman M.

Year:

2018

Language:

english

File:

PDF, 537 KB

english, 2018

3

Draft Genome Sequence of Deinococcus indicus DR1, a Novel Strain Isolated from a Freshwater Wetland

Chauhan, Deepika, Srivastava, Pulkit Anupam, Yennamalli, Ragothaman M., Priyadarshini, Richa

Journal:

Genome Announcements

Year:

2017

Language:

english

File:

PDF, 119 KB

english, 2017

4

Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 Å resolution

Weerth, R. Sophia, Michalska, Karolina, Bingman, Craig A., Yennamalli, Ragothaman M., Li, Hui, Jedrzejczak, Robert, Wang, Fengbin, Babnigg, Gyorgy, Joachimiak, Andrzej, Thomas, Michael G., Phillips, G

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 386 KB

english, 2015

5

Crystal Structures of SgcE6 and SgcC, the Two-Component Monooxygenase That Catalyzes Hydroxylation of a Carrier Protein-Tethered Substrate during the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027 in Streptomyces globisporus

Chang, Chin-Yuan, Lohman, Jeremy R., Cao, Hongnan, Tan, Kemin, Rudolf, Jeffrey D., Ma, Ming, Xu, Weijun, Bingman, Craig A., Yennamalli, Ragothaman M., Bigelow, Lance, Babnigg, Gyorgy, Yan, Xiaohui, Jo

Journal:

Year:

2016

Language:

english

File:

PDF, 2.67 MB

english, 2016

6

Endoglucanases: insights into thermostability for biofuel applications

Yennamalli, Ragothaman M, Rader, Andrew J, Kenny, Adam J, Wolt, Jeffrey D, Sen, Taner Z

Journal:

Biotechnology for Biofuels

Year:

2013

Language:

english

File:

PDF, 353 KB

english, 2013

7

Histidine protonation and the activation of viral fusion proteins

Mueller, Daniela S., Kampmann, Thorsten, Yennamalli, Ragothaman, Young, Paul R., Kobe, Bostjan, Mark, Alan E.

Journal:

Biochemical Society Transactions

Year:

2008

Language:

english

File:

PDF, 386 KB

english, 2008

8

Sequence, Structure and Dynamics Analysis of Thermostability in Endoglucanases

Yennamalli, Ragothaman M., Wolt, Jeffrey D., Rader, Andrew J., Sen, Taner Z.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 41 KB

english, 2011

9

Characterization of doxorubicin binding site and drug induced alteration in the functionally important structural state of oxyhemoglobin

Shahper N. Khan, Barira Islam, Ragothaman Yennamalli, Qamar Zia, Naidu Subbarao, Asad U. Khan

Journal:

Journal of Pharmaceutical and Biomedical Analysis

Year:

2008

Language:

english

File:

PDF, 906 KB

english, 2008

10

Investigations concerwing the prenatal-toxicological effects of humic acid on rats

Yennamalli, Ragothaman M., Wolt, Jeffrey D., Rader, Andrew J., Sen, Taner Z.

Journal:

General Pharmacology: The Vascular System

Year:

1981

Language:

english

File:

PDF, 68 KB

english, 1981

11

Crystal structure of SsfS6, the putative C -glycosyltransferase involved in SF2575 biosynthesis

Wang, Fengbin, Zhou, Maoquan, Singh, Shanteri, Yennamalli, Ragothaman M., Bingman, Craig A., Thorson, Jon S., Phillips, George N.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 326 KB

english, 2013

12

Structural Characterization of CalS8, a TDP-α-d-Glucose Dehydrogenase Involved in Calicheamicin Aminodideoxypentose Biosynthesis

Singh, Shanteri, Michalska, Karolina, Bigelow, Lance, Endres, Michael, Kharel, Madan K., Babnigg, Gyorgy, Yennamalli, Ragothaman M., Bingman, Craig A., Joachimiak, Andrzej, Thorson, Jon S., Phillips,

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 2.95 MB

english, 2015

13

Biochemical characterization and molecular modeling of a unique lipase from Staphylococcus arlettae JPBW-1

Chauhan, Mamta, Yennamalli, Ragothaman M., Garlapati, Vijay Kumar

Journal:

Engineering in Life Sciences

Year:

2016

Language:

english

File:

PDF, 545 KB

english, 2016

14

A rigid network of long-range contacts increases thermostability in a mutant endoglucanase

Rader, A.J., Yennamalli, Ragothaman M., Harter, Andrew K., Sen, Taner Z.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2012

Language:

english

File:

PDF, 258 KB

english, 2012

15

Origins of Thermophilicity in Endoglucanases

Yennamalli, Ragothaman M., Wolt, Jeffrey D., Sen, Taner Z.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 41 KB

english, 2010

16

Application of Molecular Simulations Toward Understanding Cellulase Mechanisms

Arora, Mansi, Yennamalli, Ragothaman M., Sen, Taner Z.

Journal:

BioEnergy Research

Year:

2018

Language:

english

File:

PDF, 2.15 MB

english, 2018

17

In silico screening of small molecule libraries using the dengue virus envelope E protein has identified compounds with antiviral activity against multiple flaviviruses

Thorsten Kampmann, Ragothaman Yennamalli, Phillipa Campbell, Martin J. Stoermer, David P. Fairlie, Bostjan Kobe, Paul R. Young

Journal:

Antiviral Research

Year:

2009

Language:

english

File:

PDF, 955 KB

english, 2009

18

Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 Å resolution

Sophia Weerth, R., Michalska, Karolina, Bingman, Craig A., Yennamalli, Ragothaman M., Li, Hui, Jedrzejczak, Robert, Wang, Fengbin, Babnigg, Gyorgy, Joachimiak, Andrzej, Thomas, Michael G., Phillips, G

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

19

A Clade-Specific Arabidopsis Gene Connects Primary Metabolism and Senescence

Jones, Dallas C., Zheng, Wenguang, Huang, Sheng, Du, Chuanlong, Zhao, Xuefeng, Yennamalli, Ragothaman M., Sen, Taner Z., Nettleton, Dan, Wurtele, Eve S., Li, Ling

Journal:

Frontiers in Plant Science

Year:

2016

Language:

english

File:

PDF, 2.79 MB

english, 2016

20

Dynamics of Endoglucanase Catalytic Domains: Implications Towards Thermostability

Yennamalli, Ragothaman M., Wolt, Jeffrey D., Sen, Taner Z.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 5.98 MB

english, 2011

21

Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases

Book, Adam J, Yennamalli, Ragothaman M, Takasuka, Taichi E, Currie, Cameron R, Phillips, George N, Fox, Brian G

Journal:

Biotechnology for Biofuels

Year:

2014

Language:

english

File:

PDF, 8.14 MB

english, 2014

22

Non-synonymous single nucleotide polymorphisms of ATG5 destabilize ATG12–ATG5/ATG16L1 complex: An enzyme with E3 like activity of ubiquitin conjugation system

Vij, Avni, Yennamalli, Ragothaman M., Changotra, Harish

Journal:

Year:

2017

Language:

english

File:

PDF, 1014 KB

english, 2017

23

Structure and function prediction of arsenate reductase from Deinococcus indicus DR1

Chauhan, Deepika, Srivastava, Pulkit A., Agnihotri, Vidushi, Yennamalli, Ragothaman M., Priyadarshini, Richa

Journal:

Journal of Molecular Modeling

Year:

2019

Language:

english

File:

PDF, 2.33 MB

english, 2019

24

PreDSLpmo: a neural network-based prediction tool for functional annotation of lytic polysaccharide monooxygenases

Srivastava, Pulkit Anupam, Hegg, Eric L., Fox, Brian G., Yennamalli, Ragothaman M.

Journal:

Journal of Biotechnology

Year:

2019

File:

PDF, 2.62 MB

2019

25

Random insertion transposon mutagenesis of Mycobacterium fortuitum identified mutant defective in biofilm formation

Katoch, Poonam, Gupta, Kinam, Yennamalli, Ragothaman M., Vashistt, Jitendraa, Bisht, Gopal Singh, Shrivastava, Rahul

Journal:

Biochemical and Biophysical Research Communications

Year:

2019

Language:

english

File:

PDF, 1004 KB

english, 2019

26

Thermostability in endoglucanases is fold-specific

Ragothaman M Yennamalli, Andrew J Rader, Jeffrey D Wolt, Taner Z Sen

Journal:

BMC Structural Biology

Year:

2011

Language:

english

File:

PDF, 2.13 MB

english, 2011

27

Structural dynamics of a methionine γ -lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate

Cao, Hongnan, Tan, Kemin, Wang, Fengbin, Bigelow, Lance, Yennamalli, Ragothaman M., Jedrzejczak, Robert, Babnigg, Gyorgy, Bingman, Craig A., Joachimiak, Andrzej, Kharel, Madan K., Singh, Shanteri, Tho

Journal:

Structural Dynamics

Year:

2016

Language:

english

File:

PDF, 5.99 MB

english, 2016

28

Structural dynamics of lytic polysaccharide monoxygenases reveals a highly flexible substrate binding region

Arora, Radhika, Bharval, Priya, Sarswati, Sheena, Sen, Taner Z., Yennamalli, Ragothaman M.

Journal:

Journal of Molecular Graphics and Modelling

Year:

2019

Language:

english

File:

PDF, 2.66 MB

english, 2019

29

Mitoxantrone Induced Impediment of Histone Acetylation and Structural Flexibility of the Protein

Shahper N. Khan, Ragothaman Yennamalli, Naidu Subbarao, Asad U. Khan

Journal:

Cell Biochemistry and Biophysics

Year:

2011

Language:

english

File:

PDF, 492 KB

english, 2011

30

Single-nucleotide variations associated withMycobacterium tuberculosisKwaZulu-Natal strains

Sarbashis Das, Ragothaman M. Yennamalli, Anchal Vishnoi, Parul Gupta, Alok Bhattacharya

Journal:

Journal of Biosciences

Year:

2009

Language:

english

File:

PDF, 841 KB

english, 2009

31

Identification of novel target sites and an inhibitor of the dengue virus E protein

Ragothaman Yennamalli, Naidu Subbarao, Thorsten Kampmann, Ross P. McGeary, Paul R. Young, Bostjan Kobe

Journal:

Journal of Computer-Aided Molecular Design

Year:

2009

Language:

english

File:

PDF, 639 KB

english, 2009

32

Genome-Wide Mutagenesis of Hepatitis C Virus Reveals Ability of Genome To Overcome Detrimental Mutations

Singh, Deepak, Soni, Shalini, Khan, Shaheen, Sarangi, Aditya N., Yennamalli, Ragothaman M., Aggarwal, Rakesh, Veerapu, Naga Suresh, Pfeiffer, Julie K.

Journal:

Journal of Virology

Year:

2019

File:

PDF, 4.43 MB

2019

33

Modified S-transform as a tool to identify secondary structure elements in RNA

Singh, Nancy, Sharma, Sunil Datt, Yennamalli, Ragothaman M.

Journal:

Bio-Algorithms and Med-Systems

Year:

2017

Language:

english

File:

PDF, 1.61 MB

english, 2017

34

Ribosomal maturation factor (RimP) is essential for survival of nontuberculous mycobacteria Mycobacterium fortuitum under in vitro acidic stress conditions

Poonam,, Yennamalli, Ragothaman M., Bisht, Gopal S., Shrivastava, Rahul

Journal:

Year:

2019

Language:

english

File:

PDF, 929 KB

english, 2019

35

Cinnamate:CoA‐ligase is involved in benzoate‐derived biphenyl phytoalexin biosynthesis in Malus × domestica ‘Golden Delicious' cell cultures

Teotia, Deepa, Gaid, Mariam, Saini, Shashank Sagar, Verma, Aparna, Yennamalli, Ragothaman M., Khare, Satyajeet P., Ambatipudi, Kiran, Mir, Javid Iqbal, Beuerle, Till, Hänsch, Robert, Roy, Partha, Agra

Journal:

The Plant Journal

Year:

2019

Language:

english

File:

PDF, 2.44 MB

english, 2019

36

Interaction of mitoxantrone with human serum albumin: Spectroscopic and molecular modeling studies

Shahper N. Khan, Barira Islam, Ragothaman Yennamalli, Abdullah Sultan, Naidu Subbarao, Asad U. Khan

Journal:

European Journal of Pharmaceutical Sciences

Year:

2008

Language:

english

File:

PDF, 1.77 MB

english, 2008

37

Structure-Guided Functional Characterization of Enediyne Self-Sacrifice Resistance Proteins, CalU16 and CalU19

Elshahawi, Sherif I., Ramelot, Theresa A., Seetharaman, Jayaraman, Chen, Jing, Singh, Shanteri, Yang, Yunhuang, Pederson, Kari, Kharel, Madan K., Xiao, Rong, Lew, Scott, Yennamalli, Ragothaman M., Mil

Journal:

ACS Chemical Biology

Year:

2014

Language:

english

File:

PDF, 6.14 MB

english, 2014

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